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unction for holtwinters objects plot isoreg plot method for isoreg objects plot lm plot diagnostics for an lm object plot ppr plot ridge functions for projection pursuit regression fit plot profile nls plot a profile nls object plot spec plotting spectral densities plot stepfun plot step functions plot ts plotting time series objects poisson the poisson distribution poisson test exact poisson tests poly compute orthogonal polynomials power create a power link object power anova test power calculations for balanced one way analysis of variance power prop test power calculations for two sample test for proportions power t test power calculations for one and two sample t tests ppoints ordinates for probability plotting ppr projection pursuit regression pp test phillips perron test for unit roots prcomp principal components analysis predict model predictions predict arima forecast from arima fits predict glm predict method for glm fits predict holtwinters prediction function for fitted holt winters models predict lm predict method for linear model fits predict loess predict loess curve or surface predict nls predicting from nonlinear least squares fits predict smooth spline predict from smoothing spline fit preplot pre computations for a plotting object princomp principal components analysis printcoefmat print coefficient matrices print power htest print methods for hypothesis tests and power calculation print ts printing and formatting of time series objects profile generic function for profiling models profile nls method for profiling nls objects proj projections of models prop test test of equal or given proportions prop trend test test for trend in proportions qqnorm quantile quantile plots quade test quade test quantile sample quantiles r2dtable random 2 way tables with given marginals read ftable manipulate flat contingency tables rect hclust draw rectangles around hierarchical clusters relevel reorder levels of factor reorder dendrogram reorder a dendrogram reorder factor reorder levels of a factor replications number of replications of terms reshape reshape grouped data residuals extract model residuals runmed running medians robust scatter plot smoothing rwishart random wishart distributed matrices scatter smooth scatter plot with smooth curve fitted by loess screeplot screeplots sd standard deviation se contrast standard errors for contrasts in model terms selfstart construct self starting nonlinear models setnames set the names in an object shapiro test shapiro wilk normality test sigma extract residual standard deviation sigma signrank distribution of the wilcoxon signed rank statistic simulate simulate responses smooth tukey s running median smoothing smoothends end points smoothing for running medians smooth spline fit a smoothing spline sortedxydata create a sortedxydata object spec ar estimate spectral density of a time series from ar fit spec pgram estimate spectral density of a time series by a smoothed spec taper taper a time series by a cosine bell spectrum spectral density estimation splinefun interpolating splines ssasymp self starting nls asymptotic regression model ssasympoff self starting nls asymptotic regression model with an offset ssasymporig self starting nls asymptotic regression model through the ssbiexp self starting nls biexponential model ssd ssd matrix and estimated variance matrix in multivariate ssfol self starting nls first order compartment model ssfpl self starting nls four parameter logistic model ssgompertz self starting nls gompertz growth model sslogis self starting nls logistic model ssmicmen self starting nls michaelis menten model ssweibull self starting nls weibull growth curve model start encode the terminal times of time series stat anova glm anova statistics stats defunct defunct functions in package stats stats deprecated deprecated functions in package stats stats package the r stats package step choose a model by aic in a stepwise algorithm stepfun step functions creation and class stl seasonal decomposition of time series by loess stlmethods methods for stl objects structts fit structural time series summary aov summarize an analysis of variance model summary glm summarizing generalized linear model fits summary lm summarizing linear model fits summary manova summary method for multivariate analysis of variance summary nls summarizing non linear least squares model fits summary princomp summary method for principal components analysis supsmu friedman s supersmoother symnum symbolic number coding tdist the student t distribution termplot plot regression terms terms model terms terms formula construct a terms object from a formula terms object description of terms objects time sampling times of time series toeplitz form symmetric toeplitz matrix ts time series objects tsdiag diagnostic plots for time series fits ts methods methods for time series objects tsp tsp attribute of time series like objects ts plot plot multiple time series tssmooth use fixed interval smoothing on time series ts union bind two or more time series t test student s t test tukey the studentized range distribution tukeyhsd compute tukey honest significant differences uniform the uniform distribution uniroot one dimensional root zero finding update update and re fit a model call update formula model updating varimax rotation methods for factor analysis var test f test to compare two variances vcov calculate variance covariance matrix for a fitted model weibull the weibull distribution weighted mean weighted arithmetic mean weighted residuals compute weighted residuals weights extract model weights wilcoxon distribution of the wilcoxon rank sum statistic wilcox test wilcoxon rank sum and signed rank tests window time series windows xtabs cross tabulation zc sets contrasts for a factor stats4 coef methods methods for function coef in package stats4 confint methods methods for function confint in package stats4 loglik methods methods for function loglik in package stats4 mle maximum likelihood estimation mle class class mle for results of maximum likelihood estimation plot methods methods for function plot in package stats4 profile methods methods for function profile in package stats4 profile mle class class profile mle profiling information for mle show methods methods for function show in package stats4 stats4 package statistical functions using s4 classes summary methods methods for function summary in package stats4 summary mle class class summary mle summary of mle objects update methods methods for function update in package stats4 vcov methods methods for function vcov in package stats4 tcltk tclinterface low level tcl tk interface tclservicemode allow tcl events to be serviced or not tcltk defunct defunct functions in package tcltk tcltk package tcl tk interface tk_choose dir choose a folder interactively tk_choose files choose a list of files interactively tkcommands tk non widget commands tk_messagebox tk message box tkpager page file using tk text widget tkprogressbar progress bars via tk tk_select list select items from a list tkstartgui tcl tk gui startup tkwidgetcmds tk widget commands tkwidgets tk widgets tools add_datalist add a datalist file to a source package assertcondition asserting error conditions bibstyle select or define a bibliography style buildvignette build one vignette buildvignettes list and build package vignettes charsets conversion tables between character sets checkff check foreign function calls checkmd5sums check and create md5 checksum files check_packages_in_dir check source packages and their reverse dependencies checkpofiles check translation files for inconsistent format strings checkrd check an rd object checkrdafiles report on details of saved images or re saves them checktnf check r packages or code for t f checkvignettes check package vignettes codoc check code documentation consistency compactpdf compact pdf files crantools cran package repository tools delimmatch delimited pattern matching dependsonpkgs find reverse dependencies encoded translate non ascii text to latex escapes fileutils file utilities find_gs_cmd find a ghostscript executable getvignetteinfo get information on installed vignettes htmlheader generate a standard html header for r help htmllinks collect html links from package documentation loadrdmacros load user defined rd help system macros makelazyloading lazy loading of packages make_translations_pkg package the current translations in the r sources makevars user and site compilation variables md5sum compute md5 checksums package_dependencies computations on the dependency hierarchy of packages package_native_routine_registration_skeleton write skeleton for adding native routine registration to a parselatex experimental functions to work with latex code parse_rd parse an rd file print via format printing utilities pskill kill a process psnice get or set the priority niceness of a process qc qc checks for r code and or documentation rcmd r cmd interface rd2html rd converters rd2txt_options set formatting options for text help rdiff difference r output files rdindex generate index from rd files rdtextfilter select text in an rd file rdutils rd utilities read 00index read 00index style files shownonascii pick out non ascii characters startdynamichelp start the dynamic html help system sweavetexfilter strip r code out of sweave file testinstalledpackage test installed packages texi2dvi compile latex files tohtml display an object in html tools defunct defunct objects in package tools tools deprecated deprecated objects in package tools tools package tools for package development tord generic function to convert object to a fragment of rd code totitlecase convert titles to title case undoc find undocumented objects updatepackages update existing packages files update_pkg_po prepare translations for a package userdir r user directories vignetteengine set or get a vignette processing engine vignetteinfo basic information about a vignette writepackages generate packages files xgettext extract translatable messages from r files in a package utils adist approximate string distances alarm alert the user apropos find objects by partial name aregexec approximate string match positions arrangewindows rearrange windows on ms windows askyesno ask a yes no question aspell spell check interface aspell utils spell check utilities available packages list available packages at cran like repositories batch batch execution of r bibentry bibliography entries browseenv browse objects in environment browseurl load url into an html browser browsevignettes list vignettes in an html browser bug report send a bug report capture output send output to a character string or file changedfiles detect which files have changed charclass character classification choosebiocmirror select a bioconductor mirror choosecranmirror select a cran mirror choose dir choose a folder interactively on ms windows choose files choose a list of files interactively on ms windows citation citing r and r packages in publications cite cite a bibliography entry citentry bibliography entries older interface clipboard read write to from the clipboard in ms windows close socket close a socket combn generate all combinations of n elements taken m at a time compareversion compare two package version numbers compile compile files for use with r on unix alikes contrib url find appropriate paths in cran like repositories count fields count the number of fields per line create post ancillary function for preparing emails and postings data data sets dataentry spreadsheet interface for entering data debugcall debug a call debugger post mortem debugging demo demonstrations of r functionality dll version dll version information on ms windows download file download file from the internet download packages download packages from cran like repositories edit invoke a text editor edit data frame edit data frames and matrices example run an examples section from the online help file edit edit one or more files filetest shell style tests on files findlinenum find the location of a line of source code or set a fix fix an object flush console flush output to a console format format unordered and ordered lists getanywhere retrieve an r object including from a namespace getfromnamespace utility functions for developing namespaces getparsedata get detailed parse information from object gets3method get an s3 method getwindowshandle get a windows handle getwindowshandles get handles of windows in the ms windows rgui glob2rx change wildcard or globbing pattern into regular expression globalvariables declarations used in checking a package hasname check for name head return the first or last parts of an object help documentation help request send a post to r help help search search the help system help start hypertext documentation hsearch utils help search utilities install install add on packages installed packages find installed packages install packages install packages from repositories or local files iss3method is method the name of an s3 method iss3stdgen check if a function acts as an s3 generic link create executable programs on unix alikes localetocharset select a suitable encoding name from a locale name ls_str list objects and their structure maintainer show package maintainer make packages html update html package list make socket create a socket connection memory size report on memory allocation on windows menu menu interaction function methods list methods for s3 generic functions or classes mirroradmin managing repository mirrors modifylist recursively modify elements of a list news build and query r or package news information nsl look up the ip address by hostname on unix alikes object size report the space allocated for an object packagedescription package description packagename find package associated with an environment package skeleton create a skeleton for a new source package packagestatus package management tools page invoke a pager on an r object person persons pkgutils utilities for building and checking add on packages process events trigger event handling prompt produce prototype of an r documentation file promptdata generate outline documentation for a data set promptpackage generate a shell for documentation of a package question documentation shortcuts rcompgen a completion generator for r rconsole r for windows configuration read dif data input from spreadsheet read fortran read fixed format data in a fortran like style read fwf read fixed width format files readregistry read a windows registry hive read socket read from or write to a socket read table data input recover browsing after an error relist allow re listing an unlist ed object remove remove add on packages remove packages remove installed packages removesource remove stored source from a function or language object rhome r home directory roman roman numerals rprof enable profiling of r s execution rprofmem enable profili...
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