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beast 2 beast2 search primary menu skip to content about book citation tutorials faq blog developers source code writing a beast 2 package source code writing a beast 2 package search for about beast 2 is a cross platform program for bayesian phylogenetic analysis of molecular sequences it estimates rooted time measured phylogenies using strict or relaxed molecular clock models it can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology beast 2 uses markov chain monte carlo mcmc to average over tree space so that each tree is weighted proportional to its posterior probability beast 2 includes a graphical user interface for setting up standard analyses and a suit of programs for analysing the results download the latest version of beast 2 is version 2 7 8 to install this version select one of the following to download the version for your operating system then update the beast base and beast app packages to v2 7 8 download for windows 90mb download for mac os x 87mb download for linux x86 91mb aarch64 92mb after this or if you already have v2 7 x x 0 1 or 2 installed you can upgrade via the package manager older versions are available from the beast2 releases web page the beast 2 source code is available from the beast2 and beastfx github repositories xml reference the xml reference is available in the online manual previous releases and version history previous releases and version history are available on the beast2 releases web page version 2 beast 2 is a rewrite of beast 1 x placing a greater emphasis on modularity this makes it easier to extend beast 2 via its package system as a result beast 2 has rapidly acquired the ability to perform a diverse array of model based analyses for a comparison of features models currently available in beast 2 with those currently implemented in beast 1 refer to this features table getting started as beast 2 is such a large and complicated application first time users may find coming to grips with the program and its capabilities a daunting task we therefore encourage you to perform the following familiarise yourself with the terminology used by beast 2 users and developers work through the available tutorials particularly those applicable to your data join the users mailing list by visiting the beast users group or sending an email to beast users subscribe googlegroups com this list is used to announce new versions and to advise users about bugs and other problems attend the taming the beast workshop after completing these introductory steps you ll be well equipped to dive into the beast 2 book beast 2 packages in beast 2 many models and analysis methods are implemented as beast 2 packages this means that the package is developed and maintained separately to beast 2 itself to access these methods you must download the corresponding packages in addition to beast 2 this is made easy by the beast 2 package manager which is part of beast 2 s graphical user interface see the managing packages page for details a list of known currently available packages is provided in the beast 2 beast 1 feature comparison table dealing with problems and performance issues while we aim to make using beast 2 a pleasant experience problems do sometimes arise in such cases the following please review the following information an explanation of error messages and their meanings the list of frequently asked questions faq for performance related issues refer to this handy list of suggestions for improving performance package development beast 2 is designed to be extended prospective package developers should refer to the package development guide who develops beast beast 2 is developed by a team of scientists around the world this web site is managed by the centre for computational evolution if you are interested in supporting the beast 2 project are encouraged to contribute and familiarize themselves with the code of conduct beast 2 is part of sib s portfolio of open databases and software tools this resource is supported as a whole or in part by the national institute of allergy and infectious diseases of the national institutes of health under grant n u24ai183840 pathogen data network bayesian evolutionary analysis by sampling trees recent posts optimal bactrian random walk acceptance probabilities may 21 2026 automatic operator tuning in beast2 february 01 2026 protein structural phylogenetics in beast 2 with 3di characters december 01 2025 phylogenetics without alignment data november 02 2025 bounded coalescent october 01 2025 served through jekyll customised theme based on the twentyfourteen wordpress theme