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keywords=ETE,toolkit,ete2,tree,visualization,newick,orthology,paralogy,phylogenetics,phylogeny,phylogenomics,python;
description=The ETE toolkits is Python library that assists in the analysis, manipulation and visualization of (phylogenetic) trees.;

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Text of the page (random words):
ete toolkit analysis and visualization of phylogenetic trees home gallery documentation python api tutorial python api reference phylogenomic tools index phylogenomic tools cookbook treeview support about download a python framework for the analysis and visualization of trees download python api cookbook phylogenomic tools contribute trees as python objects load create traverse search prune or modify hierarchical tree structures with ease using the ete python api programmatic tree visualization get full control of your tree images browse them interatively or render svg png of pdf images tree annotation custom node attributes can be rendered as graphical elements choose among external images charts symbols text labels and more jupyter notebook support prototype your methods using the jupyter notebook framework including inline visualization of trees phylogenomic tools tools overview cookbook automated reconstruction of gene and species trees run phylogenetic workflows with ease test evolutionary hypotheses you can run codeml and slr easly using ete as well as visualizing results annotate trees with taxonomic data use the ncbi taxonomy database to perform queries efficiently or to annotate your trees visualize trees and sequence alignments choose among detailed view block based domain based or condensed alignment formats compare tree topologies you can estimate distances between gene and species trees of a different size and with duplicated events summarize phylogenetic signal you can summarize phylogentic signal from multiple gene trees into a single species tree etetoolkit tweets by etetoolkit citation ete 3 reconstruction analysis and visualization of phylogenomic data jaime huerta cepas francois serra and peer bork mol biol evol 2016 doi 10 1093 molbev msw046 ete is free software gpl contact email protected