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forks fewest forks recently updated least recently updated developer y cs video courses star 82 7k code issues pull requests list of computer science courses with video lectures computer science security machine learning bioinformatics web development reinforcement learning computer vision deep learning algorithms robotics computational biology databases embedded systems systems computational physics quantum computing computer architecture database systems updated jul 7 2026 k dense ai scientific agent skills star 31 5k code issues pull requests turn any ai agent into an ai scientist the 1 agent skills library for science used by 160 000 scientists worldwide 148 ready to use skills plus 100 scientific databases covering biology chemistry medicine and drug discovery compatible with cursor claude code codex pi antigravity and the open agent skills standard bioinformatics genomics computational biology scientific visualization scientific computing drug discovery data analysis proteomics metabolomics chemoinformatics materials science clinical research claude ai scientist agent skills claudecode claude skills updated jul 21 2026 python plotly dash sponsor star 24 3k code issues pull requests data apps dashboards for python no javascript required react python productivity flask finance data science bioinformatics ai jupyter web app plotly data visualization dash dashboards gui framework charting technical computing plotly dash updated jul 22 2026 python biopython biopython star 5 1k code issues pull requests official git repository for biopython originally converted from cvs python bioinformatics genomics protein structure dna protein biopython phylogenetics sequence alignment updated jul 21 2026 python danielecook awesome bioinformatics sponsor star 4 2k code issues pull requests a curated list of awesome bioinformatics libraries and software awesome bioinformatics awesome list updated apr 7 2026 seandavi awesome single cell star 3 8k code issues pull requests community curated list of software packages and data resources for single cell including rna seq atac seq etc python bioinformatics clustering gene expression data visualization dimensionality reduction awesome list data integration atac seq single cell rna seq data scrna seq data cell differentiation gene expression profiles analysis pipeline spatial transcriptomics cell populations rna seq experiments cell clusters updated jul 14 2026 google deepvariant star 3 8k code issues pull requests deepvariant is an analysis pipeline that uses a deep neural network to call genetic variants from next generation dna sequencing data science machine learning bioinformatics deep learning genomics genome tensorflow ngs sequencing dna deep neural network deepvariant updated mar 19 2026 python nextflow io nextflow star 3 4k code issues pull requests discussions a dsl for data driven computational pipelines docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible research workflow engine slurm pipeline framework sge singularity reproducible science dataflow singularity containers updated jul 22 2026 groovy sokrypton colabfold star 2 8k code issues pull requests making protein folding accessible to all bioinformatics protein structure structure prediction multiple sequence alignment updated jul 14 2026 jupyter notebook scverse scanpy star 2 5k code issues pull requests single cell analysis in python scales to 100m cells python data science machine learning bioinformatics transcriptomics visualize data scanpy anndata scverse updated jul 22 2026 python opengene fastp star 2 4k code issues pull requests an ultra fast all in one fastq preprocessor qc adapters trimming filtering splitting merging adapter quality bioinformatics quality control filter ngs sequencing overlap splitting duplication umi trimming preprocessing filtering illumina fastq merging qc polyg updated jul 10 2026 c lh3 minimap2 star 2 2k code issues pull requests a versatile pairwise aligner for genomic and spliced nucleotide sequences bioinformatics genomics sequence alignment spliced alignment updated may 19 2026 c soedinglab mmseqs2 star 2 1k code issues pull requests mmseqs2 ultra fast and sensitive search and clustering suite bioinformatics taxonomy metagenomics alignment sequence clustering profile search sequence search linclust mmseqs blast updated jul 16 2026 c broadinstitute gatk star 2k code issues pull requests discussions official code repository for gatk versions 4 and up science bioinformatics spark genomics genome ngs sequencing dna gatk updated jul 21 2026 java allenai scispacy star 2k code issues pull requests a full spacy pipeline and models for scientific biomedical documents nlp bioinformatics spacy biomedical custom pipes scientific documents updated dec 4 2025 python bioconda bioconda recipes star 1 9k code issues pull requests conda recipes for the bioconda channel bioinformatics conda hacktoberfest package management updated jul 22 2026 shell galaxyproject galaxy star 1 8k code issues pull requests discussions data intensive science for everyone science workflow bioinformatics pipeline genomics workflow engine ngs sequencing dna usegalaxy hacktoberfest updated jul 22 2026 python ai4s research awesome ai for science star 1 8k code issues pull requests a curated list of awesome ai tools libraries papers datasets and frameworks that accelerate scientific discovery from physics and chemistry to biology materials and beyond awesome bioinformatics awesome list scientific ai ai4science ai for science ai4s updated jul 22 2026 lh3 bwa star 1 8k code issues pull requests burrow wheeler aligner for short read alignment see minimap2 for long read alignment bioinformatics genomics sequence alignment fm index updated jun 20 2026 c shenwei356 seqkit star 1 6k code issues pull requests a cross platform and ultrafast toolkit for fasta q file manipulation golang bioinformatics cross platform tool toolkit fasta manipulation sequence fastq 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