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graphein sponsor star 1 2k code issues pull requests discussions protein graph library python bioinformatics deep learning structural biology protein data bank protein structure computational biology pytorch protein drug discovery rna interactome protein design interactomics geometric deep learning ppi networks graph neural networks pytorch geometric gene regulatory networks dgl updated jul 13 2026 jupyter notebook paddlepaddle paddlehelix star 1 1k code issues pull requests discussions bio computing platform featuring large scale representation learning and multi task deep learning 螺旋桨 生物计算工具集 machine learning ddi deeplearning representation learning ppi rna structure prediction protein design dti protein folding protein structure prediction biocomputing self supervised learning graph networks protein docking molecule design updated mar 31 2026 python graylab dl4proteins notebooks star 708 code issues pull requests colab notebooks covering deep learning tools for biomolecular structure prediction and design deep learning neural networks convolutional neural networks jupyter notebooks language model protein design rna design protein structure prediction graph neural networks diffusion models protein docking small molecules updated apr 17 2026 jupyter notebook rosettacommons pyrosetta notebooks star 702 code issues pull requests jupyter notebooks for learning the pyrosetta platform for biomolecular structure prediction and design jupyter notebook dna rosetta rna structure prediction protein design protein folding protein structure prediction google colab pyrosetta protein docking updated feb 27 2026 jupyter notebook rosettacommons rosetta star 454 code issues pull requests discussions the rosetta bio macromolecule modeling package available through license with the university of washington protein structure protein design enzyme design macromolecular modeling antibody design updated jul 17 2026 c oatml markslab proteingym star 450 code issues pull requests official repository for the proteingym benchmarks benchmark computational biology protein protein design protein fitness updated mar 25 2026 html lightdock lightdock star 402 code issues pull requests protein protein protein peptide and protein dna docking framework based on the gso algorithm bioinformatics chemistry structural biology molecular structures protein structure artificial intelligence dna protein proteomics docking peptides molecular biology protein design protein protein interaction swarm intelligence structural bioinformatics protein dna interactions bioinformatics tool glowworm swarm optimization protein docking updated jul 14 2026 python adaptyvbio proteinflow star 280 code issues pull requests versatile computational pipeline for processing protein structure data for deep learning applications bioinformatics deep learning protein data bank protein structure dataset protein design updated feb 14 2024 python disco design disco star 210 code issues pull requests code for the disco model general multimodal protein design enables dna encoding of chemistry protein design enzyme design diffusion models updated may 13 2026 python aqlaboratory genie star 188 code issues pull requests de novo protein design by equivariantly diffusing oriented residue clouds protein design diffusion models updated apr 21 2024 python lpdi epfl masif neosurf star 177 code issues pull requests masif neosurf surface based protein design for ternary complexes drug design protein design molecular surface geometric deep learning updated jun 25 2026 python samsinai flexs star 175 code issues pull requests fitness landscape exploration sandbox for biological sequence design benchmarking machine learning deep learning deep reinforcement learning computational biology bayesian optimization protein design updated feb 16 2023 jupyter notebook basedlabs nolabs star 164 code issues pull requests discussions open source biolab bioinformatics ai proteins webserver synthetic biology folding protein design biolab updated dec 10 2024 javascript lucidrains chroma pytorch star 159 code issues pull requests implementation of chroma generative models of protein using ddpm and gnns in pytorch deep learning artificial intelligence protein design graph neural networks denoising diffusion updated dec 27 2022 python adaptyvbio protein design skills star 149 code issues pull requests claude code skills for protein design protein design protein engineering agent skills claude code updated jun 11 2026 cytokineking freebindcraft star 148 code issues pull requests bindcraft modified to make pyrosetta use and installation optional no license needed open source protein design peptide miniprotein bindcraft updated jul 10 2026 python msdllcpapers ovo star 140 code issues pull requests discussions ovo an open source ecosystem for de novo protein design nextflow protein design de novo bindcraft rfdiffusion updated jul 13 2026 python bytedance pxdesignbench star 137 code issues pull requests a unified evaluation suite for protein design research protein design ai4science updated jan 27 2026 python j snackkb flip star 135 code issues pull requests a collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design protein protein sequences representation learning protein design protein function prediction protein fitness prediction updated apr 23 2026 jupyter notebook load more improve this page add a description image and links to the protein design topic page so that developers can more easily learn about it curate this topic add this topic to your repo to associate your repository with the protein design topic visit your repo s landing page and select manage topics learn more footer 2026 github inc footer navigation terms privacy security status community docs contact manage cookies do not share my personal information you can t perform that action at this time