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idr image data resource cell idr tissue idr about overview published studies api access data download deployment faq resources ome ngff examples linked resources image tools resource itr analysis environments submissions overview screens experiments the image data resource idr is a public repository of image datasets from published scientific studies where the community can submit search and access high quality bio image data cell idr tissue idr choose search field optional name idr number imaging method license organism publication authors publication title screen technology type screen type study type x search results studies images tb moving to ome zarr the idr is transitioning to the ome zarr format for improved data accessibility and performance images in other formats can no longer be fully viewed from our image viewer but thumbnails are available we are working to convert all studies to ome zarr and in the meantime non zarr images can be downloaded for local viewing all new studies must be submitted in ome zarr format group studies by type join exploring idr analyze data from publication to idr find a specific idr study from a publication view images and regions of interest rois in idr explore study metadata from gene to phenotypes query images by gene explore retrieved images and metadata including associated phenotypes view images in biofile finder from compound to analytics query images by compound find sars cov 2 dataset explore images in relation to analytical data submitted by authors the idr server is built with omero allowing access to all image data and metadata via an open api in python r java matlab and rest json see the omero api guide for more information for examples of analysis tools working with omero to access and analyze data see the analysis tools guide analysis environment setup set up local or on the cloud analysis environment access images and metadata using api run analysis examples add your own code segment image and compare fetch image and labels from idr segment nuclei using stardist compare new labels with original validate software package save locally segmentation polygons as geojson 2016 2026 university of dundee open microscopy environment creative commons attribution 4 0 international license omero is distributed under the terms of the gnu gpl for more information visit openmicroscopy org version openmicroscopy org